Index

A

add_umap_axis() (in module velot.pl)

B

benchmark_comparison() (in module velot.benchmark) benchmark_comparison_individual() (in module velot.benchmark) benchmark_dotplot() (in module velot.benchmark) benchmark_heatmaps() (in module velot.benchmark)

benchmark_ranking() (in module velot.benchmark) benchmark_summary_table() (in module velot.benchmark) BenchmarkTimer (class in velot.benchmark) bonemarrow() (in module velot.datasets) build_windows() (in module velot.tl)

C

compute_ot_velocity() (in module velot.tl) compute_trajectories() (in module velot.tl)

confidence() (in module velot.pl) cross_boundary_correctness() (in module velot.metrics)

D

dataset_overview() (in module velot.pl)

dataset_overview_simple() (in module velot.pl) dentategyrus() (in module velot.datasets)

E

erythroid() (in module velot.datasets)

F

fate_summary() (in module velot.pl)

flow_simulation() (in module velot.pl)

G

gridsearch() (in module velot.tl)

gridsearch_results() (in module velot.pl)

I

inner_cluster_coherence() (in module velot.metrics)

L

linear_with_cycle() (in module velot.datasets) load_benchmarks() (in module velot.benchmark)

load_benchmarks_per_group() (in module velot.benchmark) load_benchmarks_per_group_summary() (in module velot.benchmark)

M

metric_summary() (in module velot.pl) module velot.benchmark velot.datasets velot.metrics velot.pl velot.pp velot.tl

multifurcation() (in module velot.datasets)

N

neighbors() (in module velot.pp)

normalize() (in module velot.pp)

P

pancreas() (in module velot.datasets) pca() (in module velot.pp) prepare() (in module velot.pp)

project_to_embedding() (in module velot.tl) project_to_umap() (in module velot.tl) pseudotime() (in module velot.pp)

Q

query_velocity() (in module velot.tl)

S

save_benchmark() (in module velot.benchmark) scale() (in module velot.pp) select_genes() (in module velot.pp) simulate_flow() (in module velot.tl) smooth_velocity() (in module velot.tl) spatial_clusters() (in module velot.pl) start() (velot.benchmark.BenchmarkTimer method)

stop() (velot.benchmark.BenchmarkTimer method) summary() (in module velot.metrics) (velot.benchmark.BenchmarkTimer method) symmetric_bifurcation() (in module velot.datasets) synthetic_bifurcation() (in module velot.datasets) synthetic_cycle() (in module velot.datasets) synthetic_linear() (in module velot.datasets) synthetic_tree() (in module velot.datasets)

T

total (velot.benchmark.BenchmarkTimer property) training_curves() (in module velot.pl)

training_curves_single() (in module velot.pl) trajectories() (in module velot.pl)

U

umap() (in module velot.pp)

V

velocity() (in module velot.tl) velocity_comparison() (in module velot.pl) velocity_quiver() (in module velot.pl) velocity_stream() (in module velot.pl) velot.benchmark module velot.datasets module

velot.metrics module velot.pl module velot.pp module velot.tl module

W

window_transport() (in module velot.pl)

windows() (in module velot.pl)